PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0229s00170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 122aa    MW: 12847.4 Da    PI: 7.8992
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0229s00170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.6e-153579146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                      +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c+  +++
  Vang0229s00170.1 35 KGPWSPEEDAILSRLVSKFGARNWSLIARGIS-GRSGKSCRYSYYS 79
                      79******************************.********87776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4283085IPR017930Myb domain
SuperFamilySSF466899.33E-143181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-173281IPR009057Homeodomain-like
SMARTSM007176.2E-123483IPR001005SANT/Myb domain
PfamPF002491.6E-143580IPR001005SANT/Myb domain
CDDcd001674.74E-143780No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MEPEETAATA VDGSGDEGLL LLEGSDVGGG KDRVKGPWSP EEDAILSRLV SKFGARNWSL  60
IARGISGRSG KSCRYSYYSL TDAVPVSING YKVSAILDIV GKCGCCSRNF SRNGSTLREK  120
P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-120AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515157.14e-44PREDICTED: transcriptional activator Myb
TrEMBLA0A0S3SWF35e-44A0A0S3SWF3_PHAAN; Uncharacterized protein
STRINGGLYMA03G15810.13e-25(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2009255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-18myb domain protein 109